What are some common issues with PDB files?
An example of an AI chatbot conversation about common issues with PDB files.
What are some common issues with PDB files?
Common issues with PDB files include missing atoms, incorrect coordinates, and formatting errors.
How can I fix missing atoms in a PDB file?
You can fix missing atoms by using software tools like PyMOL or Chimera to visualize and manually add them.
What tools can I use to validate a PDB file?
Tools like MolProbity, PDBFixer, and ValidatePDB can help you validate and correct PDB files.
Are there any specific formatting errors I should look out for?
Yes, look for issues like incorrect atom naming, missing headers, and improper line lengths.
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